Detailed information of SNP:
|
SNP ID:
sf0217732030(Gbrowse)
Chromosome: chr02 Position: 17732030 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 57.20% | 42.80% |
| All Indica | 783 | 28.74% | 71.26% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 364 | 31.87% | 68.13% |
| Indica II | 210 | 31.43% | 68.57% |
| Indica Intermediate | 209 | 20.57% | 79.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217732030 | G->A | INTERGENIC | None |