Detailed information of SNP:
|
SNP ID:
sf0217732038(Gbrowse)
Chromosome: chr02 Position: 17732038 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 58.39% | 41.61% |
| All Indica | 777 | 30.24% | 69.76% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 361 | 34.07% | 65.93% |
| Indica II | 210 | 31.90% | 68.10% |
| Indica Intermediate | 206 | 21.84% | 78.16% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217732038 | C->G | INTERGENIC | None |