Detailed information of SNP:
|
SNP ID:
sf0217733540(Gbrowse)
Chromosome: chr02 Position: 17733540 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 62.73% | 37.27% |
| All Indica | 771 | 37.48% | 62.52% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 361 | 41.83% | 58.17% |
| Indica II | 204 | 40.20% | 59.80% |
| Indica Intermediate | 206 | 27.18% | 72.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217733540 | G->C | INTERGENIC | None |