Detailed information of SNP:
|
SNP ID:
sf0217760811(Gbrowse)
Chromosome: chr02 Position: 17760811 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1313 | 96.57% | 3.43% |
| All Indica | 774 | 100.00% | 0.00% |
| All Japonica | 421 | 89.55% | 10.45% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 100.00% | 0.00% |
| Indica II | 200 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 293 | 85.32% | 14.68% |
| Tropical Japonica | 76 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 98.08% | 1.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217760811 | G->A | LOC_Os02g29870(LOC_Os02g29870.1) | INTRON |