Detailed information of SNP:
|
SNP ID:
sf0217762512(Gbrowse)
Chromosome: chr02 Position: 17762512 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 55.97% | 44.03% |
| All Indica | 787 | 88.06% | 11.94% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 364 | 86.81% | 13.19% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217762512 | G->C | INTERGENIC | None |