Detailed information of SNP:
|
SNP ID:
sf0217782011(Gbrowse)
Chromosome: chr02 Position: 17782011 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.50% | 38.50% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217782011 | C->T | INTERGENIC | None |