Detailed information of SNP:
|
SNP ID:
sf0217783260(Gbrowse)
Chromosome: chr02 Position: 17783260 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.67% | 35.33% |
| All Indica | 798 | 48.87% | 51.13% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 33.07% | 66.93% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217783260 | G->A | INTERGENIC | None |