Detailed information of SNP:
|
SNP ID:
sf0217786314(Gbrowse)
Chromosome: chr02 Position: 17786314 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 76.14% | 23.86% |
| All Indica | 784 | 58.29% | 41.71% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 71.31% | 28.69% |
| Indica II | 212 | 50.47% | 49.53% |
| Indica Intermediate | 206 | 43.20% | 56.80% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217786314 | A->C | INTERGENIC | None |