Detailed information of SNP:
|
SNP ID:
sf0217786367(Gbrowse)
Chromosome: chr02 Position: 17786367 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 56.98% | 43.02% |
| All Indica | 786 | 89.06% | 10.94% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 364 | 90.38% | 9.62% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217786367 | T->C | INTERGENIC | None |