Detailed information of SNP:
|
SNP ID:
sf0217791825(Gbrowse)
Chromosome: chr02 Position: 17791825 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 51.03% | 48.97% |
| All Indica | 783 | 24.78% | 75.22% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 363 | 25.62% | 74.38% |
| Indica II | 211 | 29.86% | 70.14% |
| Indica Intermediate | 209 | 18.18% | 81.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217791825 | A->G | INTERGENIC | None |