Detailed information of SNP:
|
SNP ID:
sf0217801201(Gbrowse)
Chromosome: chr02 Position: 17801201 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 73.95% | 26.05% |
| All Indica | 796 | 64.32% | 35.68% |
| All Japonica | 483 | 99.38% | 0.62% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 373 | 52.28% | 47.72% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 321 | 99.38% | 0.62% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217801201 | C->T | LOC_Os02g29960(LOC_Os02g29960.1) | INTRON |