Detailed information of SNP:
|
SNP ID:
sf0217803381(Gbrowse)
Chromosome: chr02 Position: 17803381 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.69% | 48.31% |
| All Indica | 798 | 59.27% | 40.73% |
| All Japonica | 497 | 30.38% | 69.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 67.20% | 32.80% |
| Indica II | 212 | 51.89% | 48.11% |
| Indica Intermediate | 211 | 52.61% | 47.39% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217803381 | T->C | INTERGENIC | None |