Detailed information of SNP:
|
SNP ID:
sf0217803899(Gbrowse)
Chromosome: chr02 Position: 17803899 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 77.03% | 22.97% |
| All Indica | 799 | 82.35% | 17.65% |
| All Japonica | 497 | 69.82% | 30.18% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217803899 | G->A | INTERGENIC | None |