Detailed information of SNP:
|
SNP ID:
sf0217806376(Gbrowse)
Chromosome: chr02 Position: 17806376 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.23% | 38.77% |
| All Indica | 796 | 60.93% | 39.07% |
| All Japonica | 497 | 69.82% | 30.18% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 49.73% | 50.27% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217806376 | C->T | INTERGENIC | None |