Detailed information of SNP:
|
SNP ID:
sf0217806864(Gbrowse)
Chromosome: chr02 Position: 17806864 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.66% | 38.34% |
| All Indica | 799 | 61.45% | 38.55% |
| All Japonica | 497 | 70.02% | 29.98% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 50.67% | 49.33% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217806864 | C->T | INTERGENIC | None |