Detailed information of SNP:
|
SNP ID:
sf0217813755(Gbrowse)
Chromosome: chr02 Position: 17813755 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.16% | 39.84% |
| All Indica | 799 | 75.72% | 24.28% |
| All Japonica | 497 | 30.78% | 69.22% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 68.80% | 31.20% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217813755 | A->G | INTERGENIC | None |