Detailed information of SNP:
|
SNP ID:
sf0217829841(Gbrowse)
Chromosome: chr02 Position: 17829841 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 68.83% | 31.17% |
| All Indica | 798 | 70.30% | 29.70% |
| All Japonica | 497 | 70.42% | 29.58% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217829841 | A->G | INTERGENIC | None |