Detailed information of SNP:
|
SNP ID:
sf0217832989(Gbrowse)
Chromosome: chr02 Position: 17832989 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.52% | 43.48% |
| All Indica | 799 | 45.56% | 54.44% |
| All Japonica | 497 | 69.62% | 30.38% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 60.00% | 40.00% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217832989 | C->T | LOC_Os02g30020(LOC_Os02g30020.1) | Non-Synonymous SNP |