Detailed information of SNP:
|
SNP ID:
sf0217837042(Gbrowse)
Chromosome: chr02 Position: 17837042 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 88.16% | 11.84% |
| All Indica | 786 | 82.32% | 17.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 368 | 75.54% | 24.46% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 205 | 82.93% | 17.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217837042 | C->T | LOC_Os02g30040(LOC_Os02g30040.1) | Synonymous |