Detailed information of SNP:
|
SNP ID:
sf0217837891(Gbrowse)
Chromosome: chr02 Position: 17837891 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.23% | 17.77% |
| All Indica | 798 | 72.81% | 27.19% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217837891 | G->A | LOC_Os02g30040(LOC_Os02g30040.1) | Synonymous |