Detailed information of SNP:
|
SNP ID:
sf0217839518(Gbrowse)
Chromosome: chr02 Position: 17839518 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 68.30% | 31.70% |
| All Indica | 694 | 92.65% | 7.35% |
| All Japonica | 497 | 30.99% | 69.01% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 301 | 90.03% | 9.97% |
| Indica II | 207 | 97.10% | 2.90% |
| Indica Intermediate | 186 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217839518 | A->G | INTERGENIC | None |