Detailed information of SNP:
|
SNP ID:
sf0217839668(Gbrowse)
Chromosome: chr02 Position: 17839668 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 87.28% | 12.72% |
| All Indica | 796 | 79.65% | 20.35% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 372 | 71.77% | 28.23% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217839668 | G->A | INTERGENIC | None |