Detailed information of SNP:
|
SNP ID:
sf0217839936(Gbrowse)
Chromosome: chr02 Position: 17839936 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.96% | 38.04% |
| All Indica | 798 | 78.95% | 21.05% |
| All Japonica | 497 | 30.78% | 69.22% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217839936 | A->G | INTERGENIC | None |