Detailed information of SNP:
|
SNP ID:
sf0217840685(Gbrowse)
Chromosome: chr02 Position: 17840685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 84.97% | 15.03% |
| All Indica | 732 | 73.09% | 26.91% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 83.72% | 16.28% |
| Indica II | 196 | 57.65% | 42.35% |
| Indica Intermediate | 192 | 69.79% | 30.21% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217840685 | C->T | LOC_Os02g30050(LOC_Os02g30050.1) | Synonymous |