Detailed information of SNP:
|
SNP ID:
sf0217841848(Gbrowse)
Chromosome: chr02 Position: 17841848 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 65.89% | 34.11% |
| All Indica | 799 | 45.31% | 54.69% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217841848 | A->G | LOC_Os02g30050(LOC_Os02g30050.1) | UTR_3_PRIME |