Detailed information of SNP:
|
SNP ID:
sf0217849917(Gbrowse)
Chromosome: chr02 Position: 17849917 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 51.80% | 48.20% |
| All Indica | 745 | 29.66% | 70.34% |
| All Japonica | 472 | 92.37% | 7.63% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 352 | 18.47% | 81.53% |
| Indica II | 204 | 37.25% | 62.75% |
| Indica Intermediate | 189 | 42.33% | 57.67% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 80 | 77.50% | 22.50% |
| Japonica Intermediate | 58 | 75.86% | 24.14% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217849917 | G->A | INTERGENIC | None |