Detailed information of SNP:
|
SNP ID:
sf0217851798(Gbrowse)
Chromosome: chr02 Position: 17851798 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 73.53% | 26.47% |
| All Indica | 780 | 64.62% | 35.38% |
| All Japonica | 492 | 93.90% | 6.10% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 370 | 62.70% | 37.30% |
| Indica II | 207 | 53.14% | 46.86% |
| Indica Intermediate | 203 | 79.80% | 20.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217851798 | A->G | INTERGENIC | None |