Detailed information of SNP:
|
SNP ID:
sf0217856056(Gbrowse)
Chromosome: chr02 Position: 17856056 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 52.21% | 47.79% |
| All Indica | 774 | 38.11% | 61.89% |
| All Japonica | 491 | 70.06% | 29.94% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 366 | 43.99% | 56.01% |
| Indica II | 212 | 40.57% | 59.43% |
| Indica Intermediate | 196 | 24.49% | 75.51% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 89 | 3.37% | 96.63% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217856056 | A->G | INTERGENIC | None |