Detailed information of SNP:
|
SNP ID:
sf0217857925(Gbrowse)
Chromosome: chr02 Position: 17857925 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 94.57% | 5.43% |
| All Indica | 797 | 92.72% | 7.28% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217857925 | C->T | LOC_Os02g30080(LOC_Os02g30080.1) | INTRON |