Detailed information of SNP:
|
SNP ID:
sf0217858272(Gbrowse)
Chromosome: chr02 Position: 17858272 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.96% | 42.04% |
| All Indica | 793 | 30.77% | 69.23% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 370 | 36.22% | 63.78% |
| Indica II | 212 | 39.15% | 60.85% |
| Indica Intermediate | 211 | 12.80% | 87.20% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217858272 | T->C | LOC_Os02g30080(LOC_Os02g30080.1) | INTRON |