Detailed information of SNP:
|
SNP ID:
sf0217858477(Gbrowse)
Chromosome: chr02 Position: 17858477 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.14% | 32.86% |
| All Indica | 799 | 69.21% | 30.79% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217858477 | C->T | LOC_Os02g30080(LOC_Os02g30080.1) | INTRON |