Detailed information of SNP:
|
SNP ID:
sf0217914113(Gbrowse)
Chromosome: chr02 Position: 17914113 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 50.46% | 49.54% |
| All Indica | 787 | 65.95% | 34.05% |
| All Japonica | 497 | 29.58% | 70.42% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 371 | 59.30% | 40.70% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 204 | 81.37% | 18.63% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217914113 | G->A | LOC_Os02g30160(LOC_Os02g30160.1) | Synonymous |