Detailed information of SNP:
|
SNP ID:
sf0217918346(Gbrowse)
Chromosome: chr02 Position: 17918346 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.17% | 40.83% |
| All Indica | 798 | 77.82% | 22.18% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 71.47% | 28.53% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217918346 | G->A | LOC_Os02g30160(LOC_Os02g30160.1) | Non-Synonymous SNP |