Detailed information of SNP:
|
SNP ID:
sf0217918564(Gbrowse)
Chromosome: chr02 Position: 17918564 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 91.14% | 8.86% |
| All Indica | 751 | 86.82% | 13.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 54 | 68.52% | 31.48% |
| Indica I | 350 | 83.43% | 16.57% |
| Indica II | 193 | 83.94% | 16.06% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217918564 | C->T | LOC_Os02g30160(LOC_Os02g30160.1) | INTRON |