Detailed information of SNP:
|
SNP ID:
sf0217931587(Gbrowse)
Chromosome: chr02 Position: 17931587 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 71.65% | 28.35% |
| All Indica | 798 | 76.07% | 23.93% |
| All Japonica | 497 | 71.23% | 28.77% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 71.66% | 28.34% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217931587 | T->C | INTERGENIC | None |