Detailed information of SNP:
|
SNP ID:
sf0217934445(Gbrowse)
Chromosome: chr02 Position: 17934445 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 72.03% | 27.97% |
| All Indica | 798 | 75.56% | 24.44% |
| All Japonica | 496 | 71.37% | 28.63% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 71.39% | 28.61% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 7 | 71.43% | 28.57% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217934445 | G->A | INTERGENIC | None |