Detailed information of SNP:
|
SNP ID:
sf0217935126(Gbrowse)
Chromosome: chr02 Position: 17935126 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 71.28% | 28.72% |
| All Indica | 798 | 75.44% | 24.56% |
| All Japonica | 497 | 71.23% | 28.77% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 71.39% | 28.61% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217935126 | A->G | INTERGENIC | None |