Detailed information of SNP:
|
SNP ID:
sf0217945824(Gbrowse)
Chromosome: chr02 Position: 17945824 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 84.34% | 15.66% |
| All Indica | 799 | 75.47% | 24.53% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217945824 | A->T | INTERGENIC | None |