Detailed information of SNP:
|
SNP ID:
sf0217947323(Gbrowse)
Chromosome: chr02 Position: 17947323 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 53.71% | 46.29% |
| All Indica | 797 | 26.47% | 73.53% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 22.19% | 77.81% |
| Indica II | 213 | 23.00% | 77.00% |
| Indica Intermediate | 210 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217947323 | C->T | LOC_Os02g30200(LOC_Os02g30200.1) | INTRON |