Detailed information of SNP:
|
SNP ID:
sf0217947444(Gbrowse)
Chromosome: chr02 Position: 17947444 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 70.15% | 29.85% |
| All Indica | 797 | 49.81% | 50.19% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 52.55% | 47.45% |
| Indica II | 213 | 49.77% | 50.23% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217947444 | T->C | LOC_Os02g30200(LOC_Os02g30200.1) | INTRON |