Detailed information of SNP:
|
SNP ID:
sf0217963113(Gbrowse)
Chromosome: chr02 Position: 17963113 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 73.57% | 26.43% |
| All Indica | 799 | 75.59% | 24.41% |
| All Japonica | 497 | 73.64% | 26.36% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217963113 | G->A | INTERGENIC | None |