Detailed information of SNP:
|
SNP ID:
sf0217978199(Gbrowse)
Chromosome: chr02 Position: 17978199 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.29% | 42.71% |
| All Indica | 799 | 33.54% | 66.46% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 38.40% | 61.60% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217978199 | G->T | INTERGENIC | None |