Detailed information of SNP:
|
SNP ID:
sf0217988909(Gbrowse)
Chromosome: chr02 Position: 17988909 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.41% | 48.59% |
| All Indica | 796 | 43.34% | 56.66% |
| All Japonica | 497 | 71.63% | 28.37% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 32.09% | 67.91% |
| Indica II | 211 | 50.24% | 49.76% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217988909 | C->T | INTERGENIC | None |