Detailed information of SNP:
|
SNP ID:
sf0218025699(Gbrowse)
Chromosome: chr02 Position: 18025699 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 90.13% | 9.87% |
| All Indica | 759 | 82.74% | 17.26% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 92.96% | 7.04% |
| Indica II | 202 | 66.83% | 33.17% |
| Indica Intermediate | 202 | 80.69% | 19.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218025699 | A->T | INTERGENIC | None |