Detailed information of SNP:
|
SNP ID:
sf0218027776(Gbrowse)
Chromosome: chr02 Position: 18027776 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.84% | 22.16% |
| All Indica | 798 | 76.19% | 23.81% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218027776 | G->A | INTERGENIC | None |