Detailed information of SNP:
|
SNP ID:
sf0218057161(Gbrowse)
Chromosome: chr02 Position: 18057161 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.02% | 48.98% |
| All Indica | 796 | 76.38% | 23.62% |
| All Japonica | 496 | 3.63% | 96.37% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 75.07% | 24.93% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218057161 | T->C | INTERGENIC | None |