Detailed information of SNP:
|
SNP ID:
sf0218058828(Gbrowse)
Chromosome: chr02 Position: 18058828 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 79.89% | 20.11% |
| All Indica | 797 | 78.92% | 21.08% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218058828 | A->G | INTERGENIC | None |