Detailed information of SNP:
|
SNP ID:
sf0218074510(Gbrowse)
Chromosome: chr02 Position: 18074510 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 77.31% | 22.69% |
| All Indica | 799 | 76.47% | 23.53% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218074510 | G->A | INTERGENIC | None |