Detailed information of SNP:
|
SNP ID:
sf0218076425(Gbrowse)
Chromosome: chr02 Position: 18076425 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 75.36% | 24.64% |
| All Indica | 796 | 77.01% | 22.99% |
| All Japonica | 492 | 80.28% | 19.72% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 374 | 75.67% | 24.33% |
| Indica II | 211 | 66.35% | 33.65% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 24.18% | 75.82% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218076425 | T->A | INTERGENIC | None |