Detailed information of SNP:
|
SNP ID:
sf0218080526(Gbrowse)
Chromosome: chr02 Position: 18080526 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 92.28% | 7.72% |
| All Indica | 754 | 87.67% | 12.33% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 353 | 85.55% | 14.45% |
| Indica II | 208 | 91.35% | 8.65% |
| Indica Intermediate | 193 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218080526 | C->T | LOC_Os02g30370(LOC_Os02g30370.1) | INTRON |